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Accelerator:

• Accelerator
  • CXLS Overview
    • Introduction
    • Research Areas
    • Facilities and Equipment
    • Collaboration and Partnerships
    • Contact Us
  • Introduction
  • Research Areas
  • Beam Specifications
  • Facilities and Equipment
  • Collaboration and Partnerships
  • Contact Us
• CXLS Overview
  • Introduction
  • Research Areas
  • Facilities and Equipment
  • Collaboration and Partnerships
  • Contact Us

Person of Contact 1

Phone: 123-456-7890

Email: contact1@example.com

More info: Visit our website

Endstations:

• Endstations
  • Area Detector
    • Introduction
    • Dectris Eiger 4M
  • Operation of the Dectris Eiger4M Detector
    • Accessing the Dectris Menu
    • Steps to Activate ZMQ Listener
    • Initializing and Arming
    • Downloading and Overwrite Images
    • Viewing HDF5 Images Through Reborn
    • Troubleshooting
    • Filtering Images
    • ALBULA Image Viewer
    • ADXV Image Viewer
    • Additional Resources
  • Introduction
• Area Detector
  • Introduction
  • Dectris Eiger 4M
• Operation of the Dectris Eiger4M Detector
  • Accessing the Dectris Menu
  • Steps to Activate ZMQ Listener
  • Initializing and Arming
  • Downloading and Overwrite Images
  • Viewing HDF5 Images Through Reborn
  • Troubleshooting
  • Filtering Images
  • ALBULA Image Viewer
  • ADXV Image Viewer
  • Additional Resources

Person of Contact 2

Phone: 987-654-3210

Email: contact2@example.com

More info: Visit our website

Sample Delivery:

• Sample Delivery
  • Introduction

Person of Contact 3

Phone: 111-222-3333

Email: contact3@example.com

More info: Visit our website

Data Analysis:

• Data Analysis
  • Quick Start Guide for Data Analysis at CXLS
    • Getting Started
    • Setting up the Data Stream
    • Accessing the Data
  • Access
    • AGAVE Access
    • Sol Access Page
    • Globus File Sharing
  • AGAVE Access
    • Useful References
    • Prerequisites
    • AGAVE Login Steps
    • Loading Modules
    • Partitions at AGAVE
    • Running pattern_sim through CrystFEL
    • Indexing Images indexamajig through CrystFEL
  • Sol Access Page
    • Introduction
    • Access Methods
    • User Guide
    • Additional Resources
    • Module Load Commands
  • Globus File Sharing
    • Run Application (with GUI)
    • Run Application (No GUI)
    • Globus Setup in Command Line (No GUI)
    • Web Application
    • Accessing AGAVE with Globus
  • Submitting SLURM Jobs
    • AGAVE indexamajig Script
    • Parameters
    • Script Description
    • Usage
    • AGAVE pattern_sim Script
    • Usage
    • Parameters
    • Script Description
    • Key Components
  • External Software
  • Custom Software
    • RCSB Search API Scripts
  • RCSB Search API Scripts
    • Official Documentation
    • Installation and Setup
    • Accessing PDB IDs using scrape.py
    • Downloading PDB Files using download_pdb_files.py
  • Online Analysis
    • Introduction
    • Online Analysis Tools
    • Online Analysis Workflow
    • CrystFEL
    • Reborn
    • AI/ML Data Package 1 (gpCAM)
    • AI/ML Time Resolved Data Package
    • Conclusion
  • Offline Analysis
  • Projects
    • Water Background Subtraction Project (Main)
    • Water Background Subtraction Project (Stream)
    • Water Background Subtraction (Overwrite)
  • Water Background Subtraction Project (Main)
    • Imports
    • PeakThresholdProcessor Class
    • ArrayRegion Class
    • Helper Functions
    • Coordinate Menu Function
    • Main Function
  • Water Background Subtraction Project (Stream)
    • Imports
    • PeakThresholdProcessor Class
    • ArrayRegion Class
    • Helper Functions
    • Coordinate Menu Function
    • Load Stream Function
    • Main Function
  • Water Background Subtraction (Overwrite)
    • Imports
    • Duplicate Function
    • Debugging Functions
    • Overwrite Function
    • Intensity Finder Function
    • Populate Intensity Array Function
    • Main Function
  • Introduction
• AGAVE Access
  • Useful References
  • Prerequisites
  • AGAVE Login Steps
    • Using SSH to access AGAVE supercomputer:
    • Using Web Browser to access AGAVE Virtual Desktop:
  • Loading Modules
  • Partitions at AGAVE
  • Running pattern_sim through CrystFEL
  • Indexing Images indexamajig through CrystFEL
• Sol Access Page
  • Introduction
  • Access Methods
  • User Guide
  • Additional Resources
  • Module Load Commands
• Globus File Sharing
  • Run Application (with GUI)
  • Run Application (No GUI)
  • Globus Setup in Command Line (No GUI)
  • Web Application
  • Accessing AGAVE with Globus
• Submitting SLURM Jobs
  • AGAVE indexamajig Script
  • Parameters
  • Script Description
  • Usage
  • AGAVE pattern_sim Script
  • Usage
  • Parameters
  • Script Description
  • Key Components
    • SLURM Directives
    • Command Construction
    • Simulation Options
• External Software
• Custom Software
  • RCSB Search API Scripts
    • Official Documentation
    • Installation and Setup
    • Accessing PDB IDs using scrape.py
    • Downloading PDB Files using download_pdb_files.py
• RCSB Search API Scripts
  • Official Documentation
  • Installation and Setup
  • Accessing PDB IDs using scrape.py
  • Downloading PDB Files using download_pdb_files.py
• Online Analysis
  • Introduction
  • Online Analysis Tools
  • Online Analysis Workflow
  • CrystFEL
  • Reborn
  • AI/ML Data Package 1 (gpCAM)
  • AI/ML Time Resolved Data Package
  • Conclusion
• Offline Analysis
• Projects
  • Water Background Subtraction Project (Main)
    • Imports
    • PeakThresholdProcessor Class
    • ArrayRegion Class
    • Helper Functions
    • Coordinate Menu Function
    • Main Function
  • Water Background Subtraction Project (Stream)
    • Imports
    • PeakThresholdProcessor Class
    • ArrayRegion Class
    • Helper Functions
    • Coordinate Menu Function
    • Load Stream Function
    • Main Function
  • Water Background Subtraction (Overwrite)
    • Imports
    • Duplicate Function
    • Debugging Functions
    • Overwrite Function
    • Intensity Finder Function
    • Populate Intensity Array Function
    • Main Function
• Water Background Subtraction Project (Main)
  • Imports
  • PeakThresholdProcessor Class
    • PeakThresholdProcessor
  • ArrayRegion Class
    • ArrayRegion
  • Helper Functions
    • load_h5()
    • extract_region()
  • Coordinate Menu Function
    • coordinate_menu()
    • build_coord_intensity()
    • create_scatter()
  • Main Function
    • main()
• Water Background Subtraction Project (Stream)
  • Imports
  • PeakThresholdProcessor Class
    • PeakThresholdProcessor
  • ArrayRegion Class
    • ArrayRegion
  • Helper Functions
    • load_file_h5()
    • extract_region()
  • Coordinate Menu Function
  • Load Stream Function
    • load_stream()
  • Main Function
    • main()
• Water Background Subtraction (Overwrite)
  • Imports
  • Duplicate Function
    • duplicate_before_overwrite()
  • Debugging Functions
    • compare_high_low()
    • retrieve()
  • Overwrite Function
    • overwrite_low_in_high()
  • Intensity Finder Function
    • intensity_finder()
  • Populate Intensity Array Function
    • populate_intensity_array()
  • Main Function
    • main()

Person of Contact 4

Phone: 444-555-6666

Email: contact4@example.com

More info: Visit our website