Welcome to Biodesign C, CXFEL Labs
=================================== 

Welcome to the Biodesign C documentation! 

This is the main landing page for our documentation. Please choose the project you are interested in, or use the search bar to find what you are looking for:

.. note:: 
    Each button will take you to the documentation of the project you choose. If you want to go back to this page, click on the "CXFEL Labs GitPages Docs" logo on the top left corner of the page.


.. raw:: html

    <div class="custom-buttons">
        <a href="./cxls/index.html" class="button">Access CXLS Docs</a>
        <a href="./cxfel/index.html" class="button">Access CXFEL Docs</a>
    </div>

CXFEL Labs
==========

CXFEL Labs is a collection of projects developed by the Biodesign C group at Arizona State University. These projects are designed to provide a comprehensive solution for the analysis of serial femtosecond crystallography (SFX) data.


.. toctree::
   :maxdepth: 5
   :hidden:
   :caption: CXLS Contents:

   cxls/index
   cxls/index_test
   cxls/accelerator/accelerator
   cxls/accelerator/overview
   cxls/endstations/endstations
   cxls/endstations/area_detector
   cxls/endstations/cxls_eiger_4m
   cxls/sample_delivery/sample_delivery
   cxls/data_analysis/data_analysis
   cxls/data_analysis/access/agave
   cxls/data_analysis/access/sol
   cxls/data_analysis/access/globus
   cxls/data_analysis/slurm_script
   cxls/data_analysis/external_software
   cxls/data_analysis/custom_software/custom_software
   cxls/data_analysis/custom_software/rcsb_search_api
   cxls/data_analysis/online_analysis
   cxls/data_analysis/offline_analysis
   cxls/data_analysis/projects
   cxls/data_analysis/projects/background_subtraction
   cxls/data_analysis/projects/stream_background_subtraction
   cxls/data_analysis/projects/overwrite_background_subtraction

.. toctree::
    :maxdepth: 2
    :caption: CXFEL Contents:
    :hidden:

    cxfel/index
    cxfel/overview

About This Documentation
------------------------

This documentation is designed to provide a comprehensive guide for users and developers working with CXLS and CXFEL projects. It is regularly updated to reflect the latest changes and features.